Modul-modul program dalam MHi merangkumi:
- Modul Kefahaman Islam - Cth: Kefahaman Islam, Aqidah, Sirah, Fiqah, al-Quran, Hadis, Dakwah
- Pembangunan Kerohanian dan Spiritual Diri - Cth: Qiamullail, Ibadah yang sempurna, Puasa, Ikhtilat, Kuliah dan Tazkirah, Semakan Tajwid al-Quran harian
- Kemahiran Kendiri (Soft Skill) - Cth: Kemahiran Memasak, Menjahit, Membaiki Kereta/Motor, Public Speaking, Critical Thinking, Managing Diversity, Etika Blog
- Aktiviti Luaran (Outdoor Activity) - Cth: Jungle Trekking, Explorace, Night Walk, Water Confidence, Futsal Tournament, Task Force, Street Dakwah
- Aktiviti Interaktif dalam Dewan (Indoor Activity) - Cth: Majlis Persembahan MHI, Bantuan Kecemasan, Movie Nights, Interactive Games, English Section